- Introduction
- Getting Started
- Guides and Tutorials
- Introduction to Terra
- Introduction to Dockstore
- Understanding Cloud Costs
- Account Setup
- Overview of Account Setup
- Obtaining a Google ID
- Creating a Terra Account
- Billing Setup
- Overview of Billing Concepts
- Creating a Google Cloud Billing Account
- Accessing Data
- Discovering Data
- Requesting Data Access
- Data Access Controls
- Bringing Your Own Data
- Running Analysis Workflows
- Using Example Workspaces
- Running GATK in Terra
- Running Galaxy Workflows from Dockstore
- Running Interactive Analyses
- Running Jupyter Notebooks in AnVIL
- Running R / Bioconductor in AnVILL
- Running Galaxy in AnVIL
- MOOC
- What is AnVIL?
- Cloud Computing
- Cloud Costs
- Use Case: GATK
- Use Case: GWAS
- Use Case: eQTL
- Video Gallery
- Anvil
- Terra
- Dockstore
- Galaxy
- Seqr
- Workshop Archive
- Workshop Archive
- Reference
- GTEx v8 - Egress Instructions
- Cross Platform Data Access with GA4GH DRS in Terra
Running GATK in Terra
- Running GATK workflows - If you're new to running GATK on a cloud-based platform, or new to Terra, this information will help get you started. From pre-processing raw sequencing data through variant calling and joint calling, showcase workspaces provide fully reproducible workflows for critical use-cases and include extensive documentation and sample data to practice on.
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