Bioconductor - Reproducible Research with AnVILPublish
Bioconductor popup workshops provide short (less than 1 hour) virtual sessions to highlight specific parts of the Terra / AnVIL ecosystem for R and Bioconductor users.
The sessions are easy for participants to join and follow along, with minimal prerequisite skills or knowledge; it is not necessary to attend all workshops.
Sessions will have short presentations, with abundant opportunity for questions and ‘round table’ discussion about the topic of the workshop or other AnVIL-related activities.
The main goal is to engage and enable the use of AnVIL / Terra by R users. All sessions will be recorded and available after the workshop. Each workshop will include a short one-page summary of key learning objectives.
Tutorials and Videos
For a tutorial based on the workshop with an accompanying tutorial see Reproducible research with AnVILPublish.
To Register
Please register to receive connection information for each workshop.
Schedule
All workshops are offered on Mondays at lunchtime, 12:00 - 1:00 US Eastern, starting April 26.
| Date | Topic |
|---|---|
| Reproducible research with AnVILPublish (Martin Morgan) |
Other Sessions
| Date | Topic |
|---|---|
| Using R / Bioconductor in AnVIL (Martin Morgan) [recorded session] | |
| The R / Bioconductor AnVIL package for easy access to buckets, data, and workflows, and fast package installation (Martin Morgan, Nitesh Turaga) | |
| Running a workflow: Bulk RNASeq differential expression from FASTQ files to top table (Martin Morgan, Kayla Interdonato) | |
| Single-cell RNASeq with 'Orchestrating Single Cell Analysis' in R / Bioconductor (Vince Carey) | |
| Using AnVIL for teaching R / Bioconductor (Levi Waldron) | |
| Managing costs with AnVILBilling (Vince Carey) | |
| Participant stories (everyone!) |