NHGRI Analysis Visualization and Informatics Lab-space



Running a Workflow: Bulk RNASeq Differential Expression from FASTQ Files to Top Table

Popup Workshop
Monday, May 10, 2021 12:00 PM to 1:00 PM EDT

Bioconductor popup workshops provide short (less than 1 hour) virtual sessions to highlight specific parts of the Terra / AnVIL ecosystem for R and Bioconductor users.

The sessions are easy for participants to join and follow along, with minimal prerequisite skills or knowledge; it is not necessary to attend all workshops.

Sessions will have short presentations, with abundant opportunity for questions and ‘round table’ discussion about the topic of the workshop or other AnVIL-related activities.

The main goal is to engage and enable the use of AnVIL / Terra by R users. All sessions will be recorded and available after the workshop. Each workshop will include a short one-page summary of key learning objectives.

Tutorials and Videos

For a tutorial based on the workshop with an accompanying tutorial see Running a Workflow: Bulk RNASeq Differential Expression from FASTQ Files to Top Table.

To Register

Please SIGN UP to receive connection information for each workshop.


All workshops are offered on Mondays at lunchtime, 12:00 - 1:00 US Eastern, starting April 26.

May 10Running a workflow: Bulk RNASeq differential expression from FASTQ files to top table (Martin Morgan, Kayla Interdonato)

Other Sessions

April 26Using R / Bioconductor in AnVIL (Martin Morgan) [recorded session]
May 3The R / Bioconductor AnVIL package for easy access to buckets, data, and workflows, and fast package installation (Martin Morgan, Nitesh Turaga)
May 17Single-cell RNASeq with 'Orchestrating Single Cell Analysis' in R / Bioconductor (Vince Carey)
May 24Using AnVIL for teaching R / Bioconductor (Levi Waldron)
May 31Reproducible research with AnVILPublish (Martin Morgan)
June 7Managing costs with AnVILBilling (Vince Carey)
June 14Participant stories (everyone!)
The Biology of Genomes - 2021The R / Bioconductor AnVIL Package for Easy Access to Buckets, Data, and Workflows, and Fast Package Installation
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