Data Analysts - Guides and Tutorials

This section lists guides, tutorials, and other resources to help data analysts find and process data and share results in the AnVIL cloud.

Gen3

  • Getting Started with Gen3 - An overview of the Gen3 platform and how to use Gen3 to access AnVIL datasets, create cohorts, and export them to Terra workspaces.

Bioconductor

  • Getting Started with Bioconductor - Guides helping R / Bioconductor users start RStudio or Jupyter for interactive analysis and workflows for large-scale data processing.

Bioconductor Popup Workshops

Galaxy

  • Getting Started with Galaxy - A step-by-step tutorial demonstrating how to compute quality metrics of unaligned reads, align the reads to a reference genome using bowtie2, plot a coverage histogram, call variants using FreeBayes, and then summarize the variant calls using bcftools.
Cross Platform Data Access with GA4GH DRS in TerraUsing R / Bioconductor in AnVIL
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