Running GATK in Terra

  • Running GATK workflows - If you're new to running GATK on a cloud-based platform, or new to Terra, this information will help get you started. From pre-processing raw sequencing data through variant calling and joint calling, showcase workspaces provide fully reproducible workflows for critical use-cases and include extensive documentation and sample data to practice on.
Using Example WorkspacesRunning Jupyter Notebooks in AnVIL
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